Reference

Main functions The main functions that will be utilized. Some are utility functions that call on other functions in this package or other packages.
make_eml_edi()	Make metadata XML required for EDI data publication
publish_data_edi()	Publish data package on EDI
run_clean_checks()	Run basic data cleaning checks
run_qc_checks()	Run Data Quality Checks Based on Data Type
Specific QC functions Functions that check data structure or quality that are called in run_clean_checks or run_qc_checks.
check_condition_factor()	Check condition factor (K = weight / length^3 * 10^5)
check_do_saturation()	Check DO against saturation expectations
check_flat_line()	Check for flat-line periods
check_interobserver_agreement()	Check inter-observer agreement for duplicate counts
check_range()	Check if values are within acceptable range
check_rate_of_change()	Check rate of change for sudden spikes/drops
check_sensor_drift()	Check for sensor drift using moving window
clean_negative_values()	Clean negative values
clean_percent_ranges()	Clean percent values
qc_carcass_survey()	QC Checks for Carcass Survey Data
qc_chemistry()	QC Checks for Laboratory Chemistry Data
qc_fish_observation()	QC Checks for Fish Observation Data (Counts and Measurements)
qc_habitat()	QC Checks for Habitat Measurement Data
qc_invertebrate()	QC Checks for Invertebrate Sample Data
qc_rst_catch()	QC Checks for Rotary Screw Trap Data
qc_water_quality()	QC Checks for Continuous Water Quality Data
Helper functions Functions to help generate output
append_flag_reason()	Helper function to append flag reasons
format_elapsed()	Format elapsed time for logging
generate_qc_report()	Generate QC Report
log_info()	Log info message
log_issue()	Log a data issue
print_qc_summary()	Print QC Summary
print_table()	Print a labeled table